- public Annotation(String displayChar, String desc, char ss, float val,\r
- Color colour) {\r
- this(displayChar, desc, ss, val);\r
- this.colour = colour;\r
- }\r
+ // add visual cues here\r
+\r
+ /** DOCUMENT ME!! */\r
+ public Color colour = Color.black;\r
+\r
+ /**\r
+ * Creates a new Annotation object.\r
+ *\r
+ * @param displayChar DOCUMENT ME!\r
+ * @param desc DOCUMENT ME!\r
+ * @param ss DOCUMENT ME!\r
+ * @param val DOCUMENT ME!\r
+ */\r
+ public Annotation(String displayChar, String desc, char ss, float val)\r
+ {\r
+ displayCharacter = displayChar;\r
+ description = desc;\r
+ secondaryStructure = ss;\r
+ value = val;\r
+ }\r
+\r
+ /**\r
+ * Creates a new Annotation object.\r
+ *\r
+ * @param displayChar DOCUMENT ME!\r
+ * @param desc DOCUMENT ME!\r
+ * @param ss DOCUMENT ME!\r
+ * @param val DOCUMENT ME!\r
+ * @param colour DOCUMENT ME!\r
+ */\r
+ public Annotation(String displayChar, String desc, char ss, float val,\r
+ Color colour)\r
+ {\r
+ this(displayChar, desc, ss, val);\r
+ this.colour = colour;\r
+ }\r