- int[] binary;\r
- double[] dbinary;\r
-\r
- public BinarySequence(SequenceI s) {\r
- super(s.getName(),s.getSequence(),s.getStart(),s.getEnd());\r
- }\r
-\r
- public BinarySequence(String name, String sequence, int start, int end) {\r
- super(name,sequence,start,end);\r
- }\r
-\r
- public void encode() {\r
- // Set all matrix to 0\r
- dbinary = new double[getSequence().length() * 21];\r
- int nores = 21;\r
- for (int i = 0; i < dbinary.length; i++) {\r
- dbinary[i] = 0.0;\r
+ int[] binary;\r
+ double[] dbinary;\r
+\r
+ public BinarySequence(SequenceI s) {\r
+ super(s.getName(), s.getSequence(), s.getStart(), s.getEnd());\r
+ }\r
+\r
+ public BinarySequence(String name, String sequence, int start, int end) {\r
+ super(name, sequence, start, end);\r