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JAL-1894 update year/version in copyright
[jalview.git]
/
src
/
jalview
/
datamodel
/
DBRefSource.java
diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
4d3d680
..
499179b
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-38,12
+38,15
@@
public class DBRefSource
/**
* UNIPROT Entry Name
*/
/**
* UNIPROT Entry Name
*/
- public static String UP_NAME = "UNIPROT_NAME";
+ public static String UP_NAME = "UNIPROT_NAME".toUpperCase();
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
- public static final String UNIPROTKB = "UniProtKB/TrEMBL";
+ public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase();
+
+ public static final String EMBLCDSProduct = "EMBLCDSProtein"
+ .toUpperCase();
/**
* PDB Entry Code
/**
* PDB Entry Code
@@
-73,28
+76,24
@@
public class DBRefSource
/**
* GeneDB ID
*/
/**
* GeneDB ID
*/
- public static final String GENEDB = "GeneDB";
+ public static final String GENEDB = "GeneDB".toUpperCase();
/**
* List of databases whose sequences might have coding regions annotated
*/
/**
* List of databases whose sequences might have coding regions annotated
*/
- public static final String[] DNACODINGDBS =
- { EMBL, EMBLCDS, GENEDB };
+ public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB };
- public static final String[] CODINGDBS =
- { EMBLCDS, GENEDB };
+ public static final String[] CODINGDBS = { EMBLCDS, GENEDB };
- public static final String[] PROTEINDBS =
- { UNIPROT, PDB, UNIPROTKB };
+ public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
+ EMBLCDSProduct };
- public static final String[] PROTEINSEQ =
- { UNIPROT, UNIPROTKB };
+ public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB,
+ EMBLCDSProduct };
- public static final String[] PROTEINSTR =
- { PDB };
+ public static final String[] PROTEINSTR = { PDB };
- public static final String[] DOMAINDBS =
- { PFAM, RFAM };
+ public static final String[] DOMAINDBS = { PFAM, RFAM };
/**
* set of unique DBRefSource property constants. These could be used to
/**
* set of unique DBRefSource property constants. These could be used to