git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
test HMMER colour scheme
[jalview.git]
/
src
/
jalview
/
datamodel
/
HiddenMarkovModel.java
diff --git
a/src/jalview/datamodel/HiddenMarkovModel.java
b/src/jalview/datamodel/HiddenMarkovModel.java
index
e214373
..
5331f3d
100644
(file)
--- a/
src/jalview/datamodel/HiddenMarkovModel.java
+++ b/
src/jalview/datamodel/HiddenMarkovModel.java
@@
-290,7
+290,7
@@
public class HiddenMarkovModel
int symbolIndex;
int nodeIndex;
Double probability;
int symbolIndex;
int nodeIndex;
Double probability;
- if (symbol == '-')
+ if (!symbolIndexLookup.containsKey(symbol))
{
return 0d;
}
{
return 0d;
}
@@
-322,7
+322,7
@@
public class HiddenMarkovModel
int symbolIndex;
int nodeIndex;
Double probability;
int symbolIndex;
int nodeIndex;
Double probability;
- if (symbol == '-')
+ if (!symbolIndexLookup.containsKey(symbol))
{
return 0d;
}
{
return 0d;
}