git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2388 Missed commit
[jalview.git]
/
src
/
jalview
/
datamodel
/
HiddenSequences.java
diff --git
a/src/jalview/datamodel/HiddenSequences.java
b/src/jalview/datamodel/HiddenSequences.java
index
9e2cf72
..
588e5ed
100755
(executable)
--- a/
src/jalview/datamodel/HiddenSequences.java
+++ b/
src/jalview/datamodel/HiddenSequences.java
@@
-246,6
+246,12
@@
public class HiddenSequences
return hiddenSequences == null ? null : hiddenSequences[alignmentIndex];
}
return hiddenSequences == null ? null : hiddenSequences[alignmentIndex];
}
+ /**
+ * Convert absolute alignment index to visible alignment index
+ *
+ * @param alignmentIndex
+ * @return
+ */
public int findIndexWithoutHiddenSeqs(int alignmentIndex)
{
if (hiddenSequences == null)
public int findIndexWithoutHiddenSeqs(int alignmentIndex)
{
if (hiddenSequences == null)
@@
-271,6
+277,12
@@
public class HiddenSequences
return (alignmentIndex - hiddenSeqs);
}
return (alignmentIndex - hiddenSeqs);
}
+ /**
+ * Convert alignment index from visible alignment to absolute alignment
+ *
+ * @param alignmentIndex
+ * @return
+ */
public int adjustForHiddenSeqs(int alignmentIndex)
{
if (hiddenSequences == null)
public int adjustForHiddenSeqs(int alignmentIndex)
{
if (hiddenSequences == null)