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JAL-147 additions to unit test, check for negative array index
[jalview.git]
/
src
/
jalview
/
datamodel
/
HiddenSequences.java
diff --git
a/src/jalview/datamodel/HiddenSequences.java
b/src/jalview/datamodel/HiddenSequences.java
index
a57dc9c
..
98e9694
100755
(executable)
--- a/
src/jalview/datamodel/HiddenSequences.java
+++ b/
src/jalview/datamodel/HiddenSequences.java
@@
-157,9
+157,10
@@
public class HiddenSequences
int absAlignmentIndex = alignment.findIndex(sequence);
int alignmentIndex = adjustForHiddenSeqs(absAlignmentIndex);
int absAlignmentIndex = alignment.findIndex(sequence);
int alignmentIndex = adjustForHiddenSeqs(absAlignmentIndex);
- if (hiddenSequences[alignmentIndex] != null)
+ if (alignmentIndex < 0 || hiddenSequences[alignmentIndex] != null)
{
System.out.println("ERROR!!!!!!!!!!!");
{
System.out.println("ERROR!!!!!!!!!!!");
+ return;
}
hiddenSequences[alignmentIndex] = sequence;
}
hiddenSequences[alignmentIndex] = sequence;