- if(repSequence!=null\r
- && repSequence.getHiddenSequences()==null\r
- && alignmentIndex>0)\r
- repSequence = alignment.getSequenceAt(alignmentIndex-1);\r
-\r
- if(repSequence!=null\r
- && repSequence.getHiddenSequences()==null)\r
- repSequence = null;\r
+ if (repSequence != null &&\r
+ hiddenReps != null\r
+ && hiddenReps.containsKey(repSequence))\r
+ {\r
+ hiddenReps.remove(repSequence);\r
+ revealedSeqs.addElement(repSequence);\r
+ }\r