- revealedSeqs.addElement(seq);\r
- alignment.getSequences().insertElementAt(seq, alignmentIndex);\r
- if(repSequence!=null)\r
- {\r
- repSequence.showHiddenSequence(seq);\r
- }\r
+ if(seq.getLength()>0)\r
+ {\r
+ revealedSeqs.addElement(seq);\r
+ alignment.getSequences().insertElementAt(seq, alignmentIndex);\r
+ }\r
+ else\r
+ System.out.println(seq.getName()+" has been deleted");\r
+ if (repSequence != null)\r
+ {\r
+ repSequence.showHiddenSequence(seq);\r
+ }\r