git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
[jalview.git]
/
src
/
jalview
/
datamodel
/
HiddenSequences.java
diff --git
a/src/jalview/datamodel/HiddenSequences.java
b/src/jalview/datamodel/HiddenSequences.java
index
32443d8
..
e2ef318
100755
(executable)
--- a/
src/jalview/datamodel/HiddenSequences.java
+++ b/
src/jalview/datamodel/HiddenSequences.java
@@
-159,7
+159,7
@@
public class HiddenSequences
if (alignmentIndex < 0 || hiddenSequences[alignmentIndex] != null)
{
if (alignmentIndex < 0 || hiddenSequences[alignmentIndex] != null)
{
- System.out.println("ERROR!!!!!!!!!!!");
+ jalview.bin.Console.outPrintln("ERROR!!!!!!!!!!!");
return;
}
return;
}
@@
-222,8
+222,8
@@
public class HiddenSequences
end = hiddenSequences.length - 1;
}
end = hiddenSequences.length - 1;
}
- List<SequenceI> asequences;
- synchronized (asequences = alignment.getSequences())
+ List<SequenceI> asequences = alignment.getSequences();
+ synchronized (asequences)
{
for (int index = end; index > start; index--)
{
{
for (int index = end; index > start; index--)
{
@@
-239,8
+239,8
@@
public class HiddenSequences
}
else
{
}
else
{
- System.out.println(seq.getName()
- + " has been deleted whilst hidden");
+ jalview.bin.Console.outPrintln(
+ seq.getName() + " has been deleted whilst hidden");
}
}
}
}
}
}