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More informative error messages.
[jalview.git]
/
src
/
jalview
/
datamodel
/
HistoryItem.java
diff --git
a/src/jalview/datamodel/HistoryItem.java
b/src/jalview/datamodel/HistoryItem.java
index
ed119e8
..
eb4979d
100755
(executable)
--- a/
src/jalview/datamodel/HistoryItem.java
+++ b/
src/jalview/datamodel/HistoryItem.java
@@
-21,10
+21,24
@@
package jalview.datamodel;
import java.util.*;
\r
\r
\r
import java.util.*;
\r
\r
\r
-public class HistoryItem {
\r
+/**
\r
+ * DOCUMENT ME!
\r
+ *
\r
+ * @author $author$
\r
+ * @version $Revision$
\r
+ */
\r
+public class HistoryItem
\r
+{
\r
+ /** DOCUMENT ME!! */
\r
public static final int EDIT = 0;
\r
public static final int EDIT = 0;
\r
+
\r
+ /** DOCUMENT ME!! */
\r
public static final int SORT = 1;
\r
public static final int SORT = 1;
\r
+
\r
+ /** DOCUMENT ME!! */
\r
public static final int HIDE = 2;
\r
public static final int HIDE = 2;
\r
+
\r
+ /** DOCUMENT ME!! */
\r
public static final int PASTE = 3;
\r
final int type;
\r
Vector sequences;
\r
public static final int PASTE = 3;
\r
final int type;
\r
Vector sequences;
\r
@@
-32,14
+46,23
@@
public class HistoryItem {
String description;
\r
Vector hiddenSeqs;
\r
\r
String description;
\r
Vector hiddenSeqs;
\r
\r
- public HistoryItem(String description, AlignmentI al, int type) {
\r
+ /**
\r
+ * Creates a new HistoryItem object.
\r
+ *
\r
+ * @param description DOCUMENT ME!
\r
+ * @param al DOCUMENT ME!
\r
+ * @param type DOCUMENT ME!
\r
+ */
\r
+ public HistoryItem(String description, AlignmentI al, int type)
\r
+ {
\r
this.type = type;
\r
this.description = description;
\r
sequences = new Vector();
\r
alignIndex = new Vector();
\r
hiddenSeqs = new Vector();
\r
\r
this.type = type;
\r
this.description = description;
\r
sequences = new Vector();
\r
alignIndex = new Vector();
\r
hiddenSeqs = new Vector();
\r
\r
- for (int i = 0; i < al.getHeight(); i++) {
\r
+ for (int i = 0; i < al.getHeight(); i++)
\r
+ {
\r
SequenceI seq = al.getSequenceAt(i);
\r
sequences.addElement(seq);
\r
alignIndex.addElement(i + "");
\r
SequenceI seq = al.getSequenceAt(i);
\r
sequences.addElement(seq);
\r
alignIndex.addElement(i + "");
\r
@@
-47,23
+70,55
@@
public class HistoryItem {
}
\r
}
\r
\r
}
\r
}
\r
\r
- public int getType() {
\r
+ /**
\r
+ * DOCUMENT ME!
\r
+ *
\r
+ * @return DOCUMENT ME!
\r
+ */
\r
+ public int getType()
\r
+ {
\r
return type;
\r
}
\r
\r
return type;
\r
}
\r
\r
- public Vector getSequences() {
\r
+ /**
\r
+ * DOCUMENT ME!
\r
+ *
\r
+ * @return DOCUMENT ME!
\r
+ */
\r
+ public Vector getSequences()
\r
+ {
\r
return sequences;
\r
}
\r
\r
return sequences;
\r
}
\r
\r
- public String getDescription() {
\r
+ /**
\r
+ * DOCUMENT ME!
\r
+ *
\r
+ * @return DOCUMENT ME!
\r
+ */
\r
+ public String getDescription()
\r
+ {
\r
return description;
\r
}
\r
\r
return description;
\r
}
\r
\r
- public Vector getHidden() {
\r
+ /**
\r
+ * DOCUMENT ME!
\r
+ *
\r
+ * @return DOCUMENT ME!
\r
+ */
\r
+ public Vector getHidden()
\r
+ {
\r
return hiddenSeqs;
\r
}
\r
\r
return hiddenSeqs;
\r
}
\r
\r
- public int getAlignIndex(int seq) {
\r
+ /**
\r
+ * DOCUMENT ME!
\r
+ *
\r
+ * @param seq DOCUMENT ME!
\r
+ *
\r
+ * @return DOCUMENT ME!
\r
+ */
\r
+ public int getAlignIndex(int seq)
\r
+ {
\r
return Integer.parseInt(alignIndex.elementAt(seq).toString());
\r
}
\r
}
\r
return Integer.parseInt(alignIndex.elementAt(seq).toString());
\r
}
\r
}
\r