git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Merge remote-tracking branch 'origin/bug/JAL-2839findWithHidden' into merge/JAL-2839_2933
[jalview.git]
/
src
/
jalview
/
datamodel
/
SearchResults.java
diff --git
a/src/jalview/datamodel/SearchResults.java
b/src/jalview/datamodel/SearchResults.java
index
e87b5f0
..
31736e5
100755
(executable)
--- a/
src/jalview/datamodel/SearchResults.java
+++ b/
src/jalview/datamodel/SearchResults.java
@@
-258,9
+258,12
@@
public class SearchResults implements SearchResultsI
{
int count = 0;
BitSet mask = new BitSet();
{
int count = 0;
BitSet mask = new BitSet();
+ int startRes = sqcol.getStartRes();
+ int endRes = sqcol.getEndRes();
+
for (SequenceI s : sqcol.getSequences())
{
for (SequenceI s : sqcol.getSequences())
{
- int[] cols = getResults(s, sqcol.getStartRes(), sqcol.getEndRes());
+ int[] cols = getResults(s, startRes, endRes);
if (cols != null)
{
for (int pair = 0; pair < cols.length; pair += 2)
if (cols != null)
{
for (int pair = 0; pair < cols.length; pair += 2)