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JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...
[jalview.git]
/
src
/
jalview
/
datamodel
/
SecondaryStructureAnnotation.java
diff --git
a/src/jalview/datamodel/SecondaryStructureAnnotation.java
b/src/jalview/datamodel/SecondaryStructureAnnotation.java
index
3bf46e4
..
e395648
100644
(file)
--- a/
src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/
src/jalview/datamodel/SecondaryStructureAnnotation.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-25,7
+25,9
@@
import fr.orsay.lri.varna.models.rna.RNA;
public class SecondaryStructureAnnotation extends AlignmentAnnotation
{
public class SecondaryStructureAnnotation extends AlignmentAnnotation
{
- private static RNA _rna = null;
+ // was static, but that cannot work here
+
+ private RNA _rna = null;
public SecondaryStructureAnnotation(RNA rna)
{
public SecondaryStructureAnnotation(RNA rna)
{
@@
-44,7
+46,7
@@
public class SecondaryStructureAnnotation extends AlignmentAnnotation
Annotation[] ann = new Annotation[rna.getSize()];
for (int i = 0; i < ann.length; i++)
{
Annotation[] ann = new Annotation[rna.getSize()];
for (int i = 0; i < ann.length; i++)
{
- ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);
+ ann[i] = new Annotation(rna.getStructDBN(true), "", ' ', 0f);
;
}
return ann;
;
}
return ann;