ref.getStart() + alseqs[i].start+bounds[0],
ref.getStart() + alseqs[i].start+(bounds[2]==0 ? -1 : bounds[2]));
seqs[i].setDatasetSequence(ref);
ref.getStart() + alseqs[i].start+bounds[0],
ref.getStart() + alseqs[i].start+(bounds[2]==0 ? -1 : bounds[2]));
seqs[i].setDatasetSequence(ref);