+ @Override
+ public String getAnnotDescr()
+ {
+ return "Sequence distance matrix";
+ }
+
+ @Override
+ public String getAnnotLabel()
+ {
+ return "Sequence Distance";
+ }
+
+ @Override
+ public String getType()
+ {
+ return SEQUENCE_DISTANCE;
+ }
+
+ @Override
+ public int getWidth()
+ {
+ return width;
+ }
+
+ @Override
+ public int getHeight()
+ {
+ return width;
+ }
+ @Override
+ protected double getElementAt(int _column, int i)
+ {
+ return Math.abs(_column - i);
+ }
+ @Override
+ protected SeqDistanceContactMatrix newMappableContactMatrix(
+ SequenceI newRefSeq, MapList newFromMapList)
+ {
+
+ return new SeqDistanceContactMatrix(width);
+ }