git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-3088 check for validEnd when working out whether arrow should point to left when...
[jalview.git]
/
src
/
jalview
/
datamodel
/
SeqDistanceContactMatrix.java
diff --git
a/src/jalview/datamodel/SeqDistanceContactMatrix.java
b/src/jalview/datamodel/SeqDistanceContactMatrix.java
index
ec19b25
..
f8fd750
100644
(file)
--- a/
src/jalview/datamodel/SeqDistanceContactMatrix.java
+++ b/
src/jalview/datamodel/SeqDistanceContactMatrix.java
@@
-7,14
+7,15
@@
import java.util.List;
import jalview.util.MapList;
import jalview.ws.datamodel.alphafold.MappableContactMatrix;
import jalview.util.MapList;
import jalview.ws.datamodel.alphafold.MappableContactMatrix;
-
/**
* Dummy contact matrix based on sequence distance
*
* @author jprocter
*
*/
/**
* Dummy contact matrix based on sequence distance
*
* @author jprocter
*
*/
-public class SeqDistanceContactMatrix extends MappableContactMatrix<SeqDistanceContactMatrix> implements ContactMatrixI
+public class SeqDistanceContactMatrix
+ extends MappableContactMatrix<SeqDistanceContactMatrix>
+ implements ContactMatrixI
{
private static final String SEQUENCE_DISTANCE = "SEQUENCE_DISTANCE";
private int width = 0;
{
private static final String SEQUENCE_DISTANCE = "SEQUENCE_DISTANCE";
private int width = 0;
@@
-82,6
+83,7
@@
public class SeqDistanceContactMatrix extends MappableContactMatrix<SeqDistanceC
}
});
}
}
});
}
+
@Override
public String getAnnotDescr()
{
@Override
public String getAnnotDescr()
{
@@
-114,14
+116,13
@@
public class SeqDistanceContactMatrix extends MappableContactMatrix<SeqDistanceC
@Override
protected double getElementAt(int _column, int i)
{
@Override
protected double getElementAt(int _column, int i)
{
- return Math.abs(_column-i);
+ return Math.abs(_column - i);
}
}
-
@Override
protected SeqDistanceContactMatrix newMappableContactMatrix(
SequenceI newRefSeq, MapList newFromMapList)
{
@Override
protected SeqDistanceContactMatrix newMappableContactMatrix(
SequenceI newRefSeq, MapList newFromMapList)
{
-
+
return new SeqDistanceContactMatrix(width);
}
}
return new SeqDistanceContactMatrix(width);
}
}