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[jalview.git]
/
src
/
jalview
/
datamodel
/
Sequence.java
diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
580c850
..
5315d1a
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-22,6
+22,8
@@
import jalview.analysis.AlignSeq;
import java.util.Enumeration;
import java.util.Vector;
import java.util.Enumeration;
import java.util.Vector;
+import fr.orsay.lri.varna.models.rna.RNA;
+
/**
*
* Implements the SequenceI interface for a char[] based sequence object.
/**
*
* Implements the SequenceI interface for a char[] based sequence object.
@@
-48,6
+50,8
@@
public class Sequence implements SequenceI
String vamsasId;
DBRefEntry[] dbrefs;
String vamsasId;
DBRefEntry[] dbrefs;
+
+ RNA rna;
/**
* This annotation is displayed below the alignment but the positions are tied
/**
* This annotation is displayed below the alignment but the positions are tied
@@
-60,7
+64,7
@@
public class Sequence implements SequenceI
*/
int index = -1;
*/
int index = -1;
- /** array of seuqence features - may not be null for a valid sequence object */
+ /** array of sequence features - may not be null for a valid sequence object */
public SequenceFeature[] sequenceFeatures;
/**
public SequenceFeature[] sequenceFeatures;
/**
@@
-1200,4
+1204,9
@@
public class Sequence implements SequenceI
{
index = value;
}
{
index = value;
}
+
+ public void setRNA(RNA r){rna=r;}
+
+ public RNA getRNA() { return rna; }
+
}
}