+
+ if (this.datasetSequence != null)
+ {
+ for (int s = i; s < j; s++)
+ {
+ if (jalview.schemes.ResidueProperties.aaIndex[sequence[s]] != 23)
+ {
+
+ Sequence ds = new Sequence(name,
+ AlignSeq.extractGaps(
+ jalview.util.Comparison.GapChars,
+ this.getSequenceAsString()
+ ),
+ start,
+ end);
+ ds.setDescription(description);
+ }
+ break;
+ }
+ }
+
+ sequence = tmp;
+