- SequenceI datasetSequence;
- String name;
- private String sequence;
- String description;
- int start;
- int end;
- Color color = Color.white;
- Vector pdbIds;
- String vamsasId;
- DBRefEntry [] dbrefs;
-
- /** This annotation is displayed below the alignment but the
- * positions are tied to the residues of this sequence */
- Vector annotation;
-
- /** DOCUMENT ME!! */
- public SequenceFeature [] sequenceFeatures;
-
- /** This array holds hidden sequences
- * of which this sequence is the representitive member of a group
- */
- SequenceGroup hiddenSequences;
-
- /**
- * Creates a new Sequence object.
- *
- * @param name DOCUMENT ME!
- * @param sequence DOCUMENT ME!
- * @param start DOCUMENT ME!
- * @param end DOCUMENT ME!
- */
- public Sequence(String name, String sequence, int start, int end)
- {
- this.name = name;
- this.sequence = sequence;
- this.start = start;
- this.end = end;
+ SequenceI datasetSequence;
+ String name;
+ private String sequence;
+ String description;
+ int start;
+ int end;
+ Vector pdbIds;
+ String vamsasId;
+ DBRefEntry[] dbrefs;
+
+ /** This annotation is displayed below the alignment but the
+ * positions are tied to the residues of this sequence */
+ Vector annotation;
+
+ /** DOCUMENT ME!! */
+ public SequenceFeature[] sequenceFeatures;
+
+ /** This array holds hidden sequences
+ * of which this sequence is the representitive member of a group
+ */
+ SequenceGroup hiddenSequences;
+
+ /**
+ * Creates a new Sequence object.
+ *
+ * @param name DOCUMENT ME!
+ * @param sequence DOCUMENT ME!
+ * @param start DOCUMENT ME!
+ * @param end DOCUMENT ME!
+ */
+ public Sequence(String name, String sequence, int start, int end)
+ {
+ this.name = name;
+ this.sequence = sequence;
+ this.start = start;
+ this.end = end;