+ this.showSequenceLogo = showSequenceLogo;
+ }
+
+ /**
+ *
+ * @param showConsHist
+ * flag indicating if the consensus histogram for this group should
+ * be rendered
+ */
+ public void setShowConsensusHistogram(boolean showConsHist)
+ {
+
+ if (showConsensusHistogram != showConsHist && consensus != null)
+ {
+ this.showConsensusHistogram = showConsHist;
+ recalcConservation();
+ }
+ this.showConsensusHistogram = showConsHist;
+ }
+
+ /**
+ * @return the showConsensusHistogram
+ */
+ public boolean isShowConsensusHistogram()
+ {
+ return showConsensusHistogram;
+ }
+
+ /**
+ * set flag indicating if logo should be normalised when rendered
+ * @param norm
+ */
+ public void setNormaliseSequenceLogo(boolean norm)
+ {
+ normaliseSequenceLogo=norm;
+ }
+ public boolean isNormaliseSequenceLogo()
+ {
+ return normaliseSequenceLogo;