+ ignoreGapsInConsensus = state;
+ recalcConservation();
+ }
+ ignoreGapsInConsensus = state;
+ }
+ public boolean getIgnoreGapsConsensus()
+ {
+ return ignoreGapsInConsensus;
+ }
+ /**
+ * @param includeAllConsSymbols the includeAllConsSymbols to set
+ */
+ public void setIncludeAllConsSymbols(boolean includeAllConsSymbols)
+ {
+ if (this.showConsensusProfile!=includeAllConsSymbols && consensus!=null) {
+ this.showConsensusProfile = includeAllConsSymbols;
+ recalcConservation();
+ }
+ this.showConsensusProfile = includeAllConsSymbols;
+ }
+
+
+ /**
+ *
+ * @param showConsHist flag indicating if the consensus histogram for this group should be rendered
+ */
+ public void setShowConsensusHistogram(boolean showConsHist)
+ {
+
+ if (showConsensusHistogram!=showConsHist && consensus!=null) {
+ this.showConsensusHistogram = showConsHist;