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JAL-2385 tweak to applet 'switch colour slider context'
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceGroup.java
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
ca90003
..
9245761
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-527,7
+527,7
@@
public class SequenceGroup implements AnnotatedCollectionI
boolean upd = false;
try
{
boolean upd = false;
try
{
- ProfileI[] cnsns = AAFrequency.calculate(sequences, startRes,
+ ProfilesI cnsns = AAFrequency.calculate(sequences, startRes,
endRes + 1, showSequenceLogo);
if (consensus != null)
{
endRes + 1, showSequenceLogo);
if (consensus != null)
{
@@
-599,9
+599,9
@@
public class SequenceGroup implements AnnotatedCollectionI
c.completeAnnotations(conservation, null, startRes, endRes + 1);
}
c.completeAnnotations(conservation, null, startRes, endRes + 1);
}
- public ProfileI[] consensusData = null;
+ public ProfilesI consensusData = null;
- private void _updateConsensusRow(ProfileI[] cnsns, long nseq)
+ private void _updateConsensusRow(ProfilesI cnsns, long nseq)
{
if (consensus == null)
{
{
if (consensus == null)
{