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JAL-2089 fix broken help link
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceGroup.java
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
046f1e6
..
9a408e3
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-23,7
+23,6
@@
package jalview.datamodel;
import jalview.analysis.AAFrequency;
import jalview.analysis.Conservation;
import jalview.schemes.ColourSchemeI;
import jalview.analysis.AAFrequency;
import jalview.analysis.Conservation;
import jalview.schemes.ColourSchemeI;
-import jalview.schemes.ResidueProperties;
import java.awt.Color;
import java.util.ArrayList;
import java.awt.Color;
import java.util.ArrayList;
@@
-548,9
+547,8
@@
public class SequenceGroup implements AnnotatedCollectionI
if ((conservation != null)
|| (cs != null && cs.conservationApplied()))
{
if ((conservation != null)
|| (cs != null && cs.conservationApplied()))
{
- Conservation c = new Conservation(groupName,
- ResidueProperties.propHash, 3, sequences, startRes,
- endRes + 1);
+ Conservation c = new Conservation(groupName, 3, sequences,
+ startRes, endRes + 1);
c.calculate();
c.verdict(false, consPercGaps);
if (conservation != null)
c.calculate();
c.verdict(false, consPercGaps);
if (conservation != null)