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RefreshPanels after a colour change
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceGroup.java
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
051db30
..
d8c5c93
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-19,8
+19,8
@@
public class SequenceGroup
public Vector sequences = new Vector();
\r
int width = -1;
\r
public ColourSchemeI cs;
\r
public Vector sequences = new Vector();
\r
int width = -1;
\r
public ColourSchemeI cs;
\r
- int startRes = 20;
\r
- int endRes = 35;
\r
+ int startRes = 0;
\r
+ int endRes = 0;
\r
\r
public SequenceGroup()
\r
{
\r
\r
public SequenceGroup()
\r
{
\r
@@
-37,7
+37,9
@@
public class SequenceGroup
boolean isSelected,
\r
boolean displayBoxes, boolean displayText,
\r
boolean colourText,
\r
boolean isSelected,
\r
boolean displayBoxes, boolean displayText,
\r
boolean colourText,
\r
- boolean display)
\r
+ boolean display,
\r
+ int start,
\r
+ int end)
\r
{
\r
\r
this.groupName = groupName;
\r
{
\r
\r
this.groupName = groupName;
\r
@@
-47,6
+49,8
@@
public class SequenceGroup
this.colourText = colourText;
\r
this.display = display;
\r
this.cs = scheme;
\r
this.colourText = colourText;
\r
this.display = display;
\r
this.cs = scheme;
\r
+ startRes = start;
\r
+ endRes = end;
\r
}
\r
\r
public String getName()
\r
}
\r
\r
public String getName()
\r
@@
-71,7
+75,16
@@
public class SequenceGroup
\r
public void addSequence(SequenceI s)
\r
{
\r
\r
public void addSequence(SequenceI s)
\r
{
\r
- sequences.addElement(s);
\r
+ if(!sequences.contains(s))
\r
+ sequences.addElement(s);
\r
+ }
\r
+
\r
+ public void addOrRemove(SequenceI s)
\r
+ {
\r
+ if(sequences.contains(s))
\r
+ deleteSequence(s);
\r
+ else
\r
+ addSequence(s);
\r
}
\r
\r
public void deleteSequence(SequenceI s)
\r
}
\r
\r
public void deleteSequence(SequenceI s)
\r