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Merge branch 'develop' into features/JAL-1705_ensembl
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
f69c8b6
..
0e649c0
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-239,6
+239,7
@@
public interface SequenceI extends ASequenceI
/**
* DOCUMENT ME!
/**
* DOCUMENT ME!
+ *
* @param position
* DOCUMENT ME!
* @param ch
* @param position
* DOCUMENT ME!
* @param ch
@@
-274,7
+275,7
@@
public interface SequenceI extends ASequenceI
*
* @return DOCUMENT ME!
*/
*
* @return DOCUMENT ME!
*/
- public Vector<PDBEntry> getPDBId();
+ public Vector<PDBEntry> getAllPDBEntries();
/**
* add entry to the vector of PDBIds, if it isn't in the list already
/**
* add entry to the vector of PDBIds, if it isn't in the list already
@@
-382,8
+383,8
@@
public interface SequenceI extends ASequenceI
/**
* Transfer any database references or annotation from entry under a sequence
* mapping. <br/>
/**
* Transfer any database references or annotation from entry under a sequence
* mapping. <br/>
- * <strong>Note: DOES NOT transfer sequence associated alignment
- * annotation </strong><br/>
+ * <strong>Note: DOES NOT transfer sequence associated alignment annotation
+ * </strong><br/>
*
* @param entry
* @param mp
*
* @param entry
* @param mp
@@
-420,4
+421,12
@@
public interface SequenceI extends ASequenceI
*/
public List<int[]> getInsertions();
*/
public List<int[]> getInsertions();
+ /**
+ * Given a pdbId String, return the equivalent PDBEntry if available in the
+ * given sequence
+ *
+ * @param pdbId
+ * @return
+ */
+ public PDBEntry getPDBEntry(String pdbId);
}
}