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Merge branch 'develop' into features/hmmer
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
271f25a
..
20362dd
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-20,6
+20,7
@@
*/
package jalview.datamodel;
*/
package jalview.datamodel;
+import java.util.BitSet;
import java.util.List;
import java.util.Vector;
import java.util.List;
import java.util.Vector;
@@
-495,4
+496,10
@@
public interface SequenceI extends ASequenceI
void setPreviousPosition(int previousPosition);
void setPreviousPosition(int previousPosition);
+ /**
+ *
+ * @return BitSet corresponding to index [0,length) where Comparison.isGap()
+ * returns true.
+ */
+ BitSet getInsertionsAsBits();
}
}