git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-3253-applet JAL-3383 Overview speed up -- see Issue comments.
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
e521029
..
013897d
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-584,11
+584,37
@@
public interface SequenceI extends ASequenceI
*/
public int firstResidueOutsideIterator(Iterator<int[]> it);
*/
public int firstResidueOutsideIterator(Iterator<int[]> it);
+ /**
+ * @author Bob Hanson 2019.07.30
+ *
+ * get a 4-byte color, with caching
+ *
+ */
public int getColor(int i);
public int getColor(int i);
- public int setColor(int i, int rgb);
+ /**
+ * @author Bob Hanson 2019.07.30
+ *
+ * set a 4-byte color, with caching
+ *
+ */
+ public int setColor(int i, int argb);
+ /**
+ * @author Bob Hanson 2019.07.30
+ *
+ * allows resetting the color cache
+ *
+ */
public void resetColors();
public void resetColors();
+ /**
+ * @author Bob Hanson 2019.07.30
+ *
+ * allows passing the result ArrayList as a parameter to avoid unnecessary construction
+ *
+ */
+ void findFeatures(int column, String type, List<SequenceFeature> result);
+
}
}