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added description of alignment quality scores and separated
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
82d38b4
..
089a5f6
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-211,14
+211,14
@@
public interface SequenceI
*
\r
* @return DOCUMENT ME!
\r
*/
\r
*
\r
* @return DOCUMENT ME!
\r
*/
\r
- public Vector getSequenceFeatures();
\r
+ public SequenceFeature[] getSequenceFeatures();
\r
\r
/**
\r
* DOCUMENT ME!
\r
*
\r
* @param v DOCUMENT ME!
\r
*/
\r
\r
/**
\r
* DOCUMENT ME!
\r
*
\r
* @param v DOCUMENT ME!
\r
*/
\r
- public void setSequenceFeatures(Vector v);
\r
+ public void setSequenceFeatures(SequenceFeature [] features);
\r
\r
/**
\r
* DOCUMENT ME!
\r
\r
/**
\r
* DOCUMENT ME!
\r
@@
-251,4
+251,9
@@
public interface SequenceI
public void setDatasetSequence(SequenceI seq);
\r
\r
public SequenceI getDatasetSequence();
\r
public void setDatasetSequence(SequenceI seq);
\r
\r
public SequenceI getDatasetSequence();
\r
+
\r
+ public AlignmentAnnotation [] getAnnotation();
\r
+
\r
+ public void addAlignmentAnnotation(AlignmentAnnotation annotation);
\r
+
\r
}
\r
}
\r