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JAL-2381 copy and paste sequence also copies contact matrix annotation
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
34dbab7
..
2e1daa3
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-415,7
+415,7
@@
public interface SequenceI extends ASequenceI, ContactMapHolderI
/**
* Derive a sequence (using this one's dataset or as the dataset)
*
/**
* Derive a sequence (using this one's dataset or as the dataset)
*
- * @return duplicate sequence with valid dataset sequence
+ * @return duplicate sequence and any annotation present with valid dataset sequence
*/
public SequenceI deriveSequence();
*/
public SequenceI deriveSequence();
@@
-596,4
+596,7
@@
public interface SequenceI extends ASequenceI, ContactMapHolderI
*/
public int firstResidueOutsideIterator(Iterator<int[]> it);
*/
public int firstResidueOutsideIterator(Iterator<int[]> it);
+ public void addContactListFor(AlignmentAnnotation annotation,
+ ContactMatrixI cm);
+
}
}