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JAL-1807 Bob's first commit -- Applet loaded; needs image
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
38ae372
..
55215a6
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-20,18
+20,21
@@
*/
package jalview.datamodel;
*/
package jalview.datamodel;
+import jalview.jsdev.api.VarnaRNA;
+
import java.util.List;
import java.util.Vector;
import java.util.List;
import java.util.Vector;
-import fr.orsay.lri.varna.models.rna.RNA;
+//import fr.orsay.lri.varna.models.rna.RNA;
/**
/**
- * DOCUMENT ME!
+ * Methods for manipulating a sequence, its metadata and related annotation in
+ * an alignment or dataset.
*
* @author $author$
* @version $Revision$
*/
*
* @author $author$
* @version $Revision$
*/
-public interface SequenceI
+public interface SequenceI extends ASequenceI
{
/**
* Set the display name for the sequence
{
/**
* Set the display name for the sequence
@@
-405,13
+408,13
@@
public interface SequenceI
* @return The RNA of the sequence in the alignment
*/
* @return The RNA of the sequence in the alignment
*/
- public RNA getRNA();
+ public VarnaRNA getRNA();
/**
* @param rna
* The RNA.
*/
/**
* @param rna
* The RNA.
*/
- public void setRNA(RNA rna);
+ public void setRNA(VarnaRNA rna);
/**
*
/**
*