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back out duplicate jfree classpath entry
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
876db03
..
8376047
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-137,10
+137,12
@@
public interface SequenceI
* create a new sequence object from start to end of this sequence
*
* @param start
* create a new sequence object from start to end of this sequence
*
* @param start
- * int
+ * int index for start position
* @param end
* @param end
- * int
+ * int index for end position
+ *
* @return SequenceI
* @return SequenceI
+ * @note implementations may use getSequence to get the sequence data
*/
public SequenceI getSubSequence(int start, int end);
*/
public SequenceI getSubSequence(int start, int end);
@@
-189,7
+191,7
@@
public interface SequenceI
* Returns the sequence position for an alignment position
*
* @param i
* Returns the sequence position for an alignment position
*
* @param i
- * column index in alignment (from 1)
+ * column index in alignment (from 0..<length)
*
* @return residue number for residue (left of and) nearest ith column
*/
*
* @return residue number for residue (left of and) nearest ith column
*/