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fix for null annotations
[jalview.git]
/
src
/
jalview
/
datamodel
/
xdb
/
embl
/
EmblEntry.java
diff --git
a/src/jalview/datamodel/xdb/embl/EmblEntry.java
b/src/jalview/datamodel/xdb/embl/EmblEntry.java
index
0f4fc24
..
49d51ad
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblEntry.java
@@
-366,24
+366,24
@@
join(1..100,J00194.1:100..202)
Qualifier q = (Qualifier) quals.next();
if (q.getName().equals("translation"))
{
Qualifier q = (Qualifier) quals.next();
if (q.getName().equals("translation"))
{
- prseq=q.getValue();
+ prseq=q.getValues()[0];
}
else
if (q.getName().equals("protein_id"))
{
}
else
if (q.getName().equals("protein_id"))
{
- prid=q.getValue();
+ prid=q.getValues()[0];
}
else
if (q.getName().equals("codon_start"))
{
}
else
if (q.getName().equals("codon_start"))
{
- prstart = Integer.parseInt(q.getValue());
+ prstart = Integer.parseInt(q.getValues()[0]);
}
else
if (q.getName().equals("product")){
}
else
if (q.getName().equals("product")){
- prname = q.getValue();
+ prname = q.getValues()[0];
} else {
// throw anything else into the additional properties hash
} else {
// throw anything else into the additional properties hash
- vals.put(q.getName(), q.getValue());
+ vals.put(q.getName(), q.getValues().toString());
}
}
}
}
}
}