- public JalviewAptxBinding(MainFrame archaeopteryx,
- AlignmentViewport jalviewAlignmentViewport,
- Map<SequenceI, PhylogenyNode> alignMappedToNodes,
- Map<PhylogenyNode, SequenceI> nodesMappedToAlign)
+ /**
+ *
+ * @param archaeopteryx
+ *
+ * @param jalviewAlignmentViewport
+ * alignment viewport from which the tree was calculated.
+ *
+ * @param alignMappedToNodes
+ * map with sequences used to calculate the tree and matching tree
+ * nodes as key, value pair respectively.
+ *
+ * @param nodesMappedToAlign
+ * map with tree nodes and matching sequences used to calculate the
+ * tree as key, value pair respectively.
+ */
+ public JalviewAptxBinding(final MainFrame archaeopteryx,
+ final AlignmentViewport jalviewAlignmentViewport,
+ final Map<SequenceI, PhylogenyNode> alignMappedToNodes,
+ final Map<PhylogenyNode, SequenceI> nodesMappedToAlign)