+ /**
+ *
+ * @param archaeopteryx
+ *
+ * @param jalviewAlignmentViewport
+ * alignment viewport from which the tree was calculated.
+ *
+ * @param alignMappedToNodes
+ * map with sequences used to calculate the tree and matching tree
+ * nodes as key, value pair respectively.
+ *
+ * @param nodesMappedToAlign
+ * map with tree nodes and matching sequences used to calculate the
+ * tree as key, value pair respectively.
+ */