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JAL-2874 added filtering when a subtree is selected
[jalview.git]
/
src
/
jalview
/
ext
/
archaeopteryx
/
LoadedTreeSequenceAssociation.java
diff --git
a/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
b/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
index
86f27d1
..
0c83036
100644
(file)
--- a/
src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
+++ b/
src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
@@
-16,13
+16,13
@@
import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
public class LoadedTreeSequenceAssociation
implements ExternalLoadedTreeAssociationI
{
public class LoadedTreeSequenceAssociation
implements ExternalLoadedTreeAssociationI
{
- SequenceI[] alignSequences;
+ private SequenceI[] alignSequences;
- Phylogeny tree;
+ private Phylogeny tree;
- Map<SequenceI, PhylogenyNode> alignmentWithNodes;
+ private Map<SequenceI, PhylogenyNode> alignmentWithNodes;
- Map<PhylogenyNode, SequenceI> nodesWithAlignment;
+ private Map<PhylogenyNode, SequenceI> nodesWithAlignment;
public LoadedTreeSequenceAssociation(SequenceI[] alignmentSequences,
Phylogeny aptxTree)
public LoadedTreeSequenceAssociation(SequenceI[] alignmentSequences,
Phylogeny aptxTree)