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JAL-2805 removed unused Aptx instance creation code
[jalview.git]
/
src
/
jalview
/
ext
/
archaeopteryx
/
TreeNode.java
diff --git
a/src/jalview/ext/archaeopteryx/TreeNode.java
b/src/jalview/ext/archaeopteryx/TreeNode.java
index
07c8d95
..
b43e9b4
100644
(file)
--- a/
src/jalview/ext/archaeopteryx/TreeNode.java
+++ b/
src/jalview/ext/archaeopteryx/TreeNode.java
@@
-1,6
+1,7
@@
package jalview.ext.archaeopteryx;
import jalview.datamodel.SequenceI;
package jalview.ext.archaeopteryx;
import jalview.datamodel.SequenceI;
+import jalview.ext.forester.DataConversions;
import jalview.ext.treeviewer.TreeNodeI;
import java.awt.Color;
import jalview.ext.treeviewer.TreeNodeI;
import java.awt.Color;
@@
-28,6
+29,11
@@
public class TreeNode implements TreeNodeI
private TreeNode(PhylogenyNode aptxNode)
{
node = aptxNode;
private TreeNode(PhylogenyNode aptxNode)
{
node = aptxNode;
+ if (aptxNode.getNodeData().getSequence() != null)
+ {
+ nodeSeq = DataConversions
+ .createJalviewSequence(aptxNode);
+ }
originalNodes.put(aptxNode, this);
wrappedNodes.put(this, aptxNode);
originalNodes.put(aptxNode, this);
wrappedNodes.put(this, aptxNode);
@@
-85,7
+91,6
@@
public class TreeNode implements TreeNodeI
public SequenceI getSequence()
{
return nodeSeq;
public SequenceI getSequence()
{
return nodeSeq;
- // ideally this would return a converted node.getNodeData().getSequence()
}
@Override
}
@Override