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JAl-1705 ENSEMBL cDNA type cannot be queried with peptide IDs
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblCdna.java
diff --git
a/src/jalview/ext/ensembl/EnsemblCdna.java
b/src/jalview/ext/ensembl/EnsemblCdna.java
index
4fc80ca
..
757b3c8
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblCdna.java
+++ b/
src/jalview/ext/ensembl/EnsemblCdna.java
@@
-2,6
+2,8
@@
package jalview.ext.ensembl;
import jalview.ext.ensembl.SeqFetcher.EnsemblSeqType;
import jalview.ext.ensembl.SeqFetcher.EnsemblSeqType;
+import com.stevesoft.pat.Regex;
+
public class EnsemblCdna extends EnsemblSeqProxy
{
public class EnsemblCdna extends EnsemblSeqProxy
{
@@
-22,4
+24,16
@@
public class EnsemblCdna extends EnsemblSeqProxy
return EnsemblSeqType.CDNA;
}
return EnsemblSeqType.CDNA;
}
+ @Override
+ public Regex getAccessionValidator()
+ {
+ return new Regex("((ENST|ENSG|CCDS)[0-9.]{3,})");
+ }
+
+ @Override
+ public String getTestQuery()
+ {
+ return "ENST00000288602";
+ }
+
}
}