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JAL-1705 EnsemblGene added, and related refactoring
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblCds.java
diff --git
a/src/jalview/ext/ensembl/EnsemblCds.java
b/src/jalview/ext/ensembl/EnsemblCds.java
index
e366569
..
58cf8fa
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblCds.java
+++ b/
src/jalview/ext/ensembl/EnsemblCds.java
@@
-45,9
+45,14
@@
public class EnsemblCds extends EnsemblSeqProxy
* itself.
*/
@Override
* itself.
*/
@Override
- protected boolean retainFeature(String type)
+ protected boolean retainFeature(SequenceFeature sf, String accessionId)
{
{
- return !SequenceOntology.getInstance().isA(type, SequenceOntology.CDS);
+ if (SequenceOntology.getInstance().isA(sf.getType(),
+ SequenceOntology.CDS))
+ {
+ return false;
+ }
+ return super.retainFeature(sf, accessionId);
}
/**
}
/**