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JAL-629 remove jvmArgs for memory for tests. Increase clover memory
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblProtein.java
diff --git
a/src/jalview/ext/ensembl/EnsemblProtein.java
b/src/jalview/ext/ensembl/EnsemblProtein.java
index
1554a0b
..
0280f16
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblProtein.java
+++ b/
src/jalview/ext/ensembl/EnsemblProtein.java
@@
-22,7
+22,9
@@
package jalview.ext.ensembl;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.SequenceI;
+import java.util.ArrayList;
import java.util.List;
import com.stevesoft.pat.Regex;
import java.util.List;
import com.stevesoft.pat.Regex;
@@
-108,10
+110,10
@@
public class EnsemblProtein extends EnsemblSeqProxy
}
@Override
}
@Override
- protected boolean identifiesSequence(SequenceFeature sf, String accId)
+ protected List<SequenceFeature> getIdentifyingFeatures(SequenceI seq,
+ String accId)
{
{
- // not applicable - protein sequence is not a 'subset' of genomic sequence
- return false;
+ return new ArrayList<>();
}
@Override
}
@Override