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JAL-1705 EnsemblGene added, and related refactoring
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblRestClient.java
diff --git
a/src/jalview/ext/ensembl/EnsemblRestClient.java
b/src/jalview/ext/ensembl/EnsemblRestClient.java
index
52993e9
..
02b13ef
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblRestClient.java
+++ b/
src/jalview/ext/ensembl/EnsemblRestClient.java
@@
-64,7
+64,7
@@
abstract class EnsemblRestClient extends EnsemblSequenceFetcher
*
* @return
*/
*
* @return
*/
- public abstract boolean useGetRequest();
+ protected abstract boolean useGetRequest();
/**
* Return the desired value for the Content-Type request header
/**
* Return the desired value for the Content-Type request header
@@
-72,7
+72,7
@@
abstract class EnsemblRestClient extends EnsemblSequenceFetcher
* @return
* @see https://github.com/Ensembl/ensembl-rest/wiki/HTTP-Headers
*/
* @return
* @see https://github.com/Ensembl/ensembl-rest/wiki/HTTP-Headers
*/
- public abstract String getRequestMimeType();
+ protected abstract String getRequestMimeType();
/**
* Return the desired value for the Accept request header
/**
* Return the desired value for the Accept request header
@@
-80,7
+80,7
@@
abstract class EnsemblRestClient extends EnsemblSequenceFetcher
* @return
* @see https://github.com/Ensembl/ensembl-rest/wiki/HTTP-Headers
*/
* @return
* @see https://github.com/Ensembl/ensembl-rest/wiki/HTTP-Headers
*/
- public abstract String getResponseMimeType();
+ protected abstract String getResponseMimeType();
/**
* Tries to connect to Ensembl's REST 'ping' endpoint, and returns true if
/**
* Tries to connect to Ensembl's REST 'ping' endpoint, and returns true if
@@
-115,7
+115,7
@@
abstract class EnsemblRestClient extends EnsemblSequenceFetcher
* @return
* @throws IOException
*/
* @return
* @throws IOException
*/
- public FileParse getSequenceReader(List<String> ids)
+ protected FileParse getSequenceReader(List<String> ids)
throws IOException
{
URL url = getUrl(ids);
throws IOException
{
URL url = getUrl(ids);
@@
-163,7
+163,7
@@
abstract class EnsemblRestClient extends EnsemblSequenceFetcher
*
* @return
*/
*
* @return
*/
- public boolean isEnsemblAvailable()
+ protected boolean isEnsemblAvailable()
{
long now = System.currentTimeMillis();
boolean retest = now - lastCheck > RETEST_INTERVAL;
{
long now = System.currentTimeMillis();
boolean retest = now - lastCheck > RETEST_INTERVAL;