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JAL-3193 removal of rest.ensemblgenomes.org
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblSymbol.java
diff --git
a/src/jalview/ext/ensembl/EnsemblSymbol.java
b/src/jalview/ext/ensembl/EnsemblSymbol.java
index
40d6cad
..
40860d2
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblSymbol.java
+++ b/
src/jalview/ext/ensembl/EnsemblSymbol.java
@@
-44,6
+44,7
@@
public class EnsemblSymbol extends EnsemblXref
{
private static final String GENE = "gene";
private static final String TYPE = "type";
{
private static final String GENE = "gene";
private static final String TYPE = "type";
+
/**
* Constructor given the target domain to fetch data from
*
/**
* Constructor given the target domain to fetch data from
*
@@
-51,9
+52,9
@@
public class EnsemblSymbol extends EnsemblXref
* @param dbName
* @param dbVersion
*/
* @param dbName
* @param dbVersion
*/
- public EnsemblSymbol(String domain, String dbName, String dbVersion)
+ public EnsemblSymbol(String dbName, String dbVersion)
{
{
- super(domain, dbName, dbVersion);
+ super(dbName, dbVersion);
}
/**
}
/**
@@
-131,8
+132,8
@@
public class EnsemblSymbol extends EnsemblXref
*/
public List<String> getGeneIds(String identifier)
{
*/
public List<String> getGeneIds(String identifier)
{
- List<String> result = new ArrayList<String>();
- List<String> ids = new ArrayList<String>();
+ List<String> result = new ArrayList<>();
+ List<String> ids = new ArrayList<>();
ids.add(identifier);
String[] queries = identifier.split(getAccessionSeparator());
ids.add(identifier);
String[] queries = identifier.split(getAccessionSeparator());