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JAL-3763 Javadoc, check for null, additional tests
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblXref.java
diff --git
a/src/jalview/ext/ensembl/EnsemblXref.java
b/src/jalview/ext/ensembl/EnsemblXref.java
index
bf77cd0
..
77768a6
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblXref.java
+++ b/
src/jalview/ext/ensembl/EnsemblXref.java
@@
-88,18
+88,6
@@
class EnsemblXref extends EnsemblRestClient
return true;
}
return true;
}
- @Override
- protected String getRequestMimeType(boolean multipleIds)
- {
- return "application/json";
- }
-
- @Override
- protected String getResponseMimeType()
- {
- return "application/json";
- }
-
/**
* Calls the Ensembl xrefs REST endpoint and retrieves any cross-references
* ("primary_id") for the given identifier (Ensembl accession id) and database
/**
* Calls the Ensembl xrefs REST endpoint and retrieves any cross-references
* ("primary_id") for the given identifier (Ensembl accession id) and database
@@
-113,8
+101,8
@@
class EnsemblXref extends EnsemblRestClient
*/
public List<DBRefEntry> getCrossReferences(String identifier)
{
*/
public List<DBRefEntry> getCrossReferences(String identifier)
{
- List<DBRefEntry> result = new ArrayList<DBRefEntry>();
- List<String> ids = new ArrayList<String>();
+ List<DBRefEntry> result = new ArrayList<>();
+ List<String> ids = new ArrayList<>();
ids.add(identifier);
BufferedReader br = null;
ids.add(identifier);
BufferedReader br = null;
@@
-124,10
+112,10
@@
class EnsemblXref extends EnsemblRestClient
if (url != null)
{
br = getHttpResponse(url, ids);
if (url != null)
{
br = getHttpResponse(url, ids);
- }
- if (br != null)
- {
- result = parseResponse(br);
+ if (br != null)
+ {
+ result = parseResponse(br);
+ }
}
} catch (IOException e)
{
}
} catch (IOException e)
{
@@
-163,7
+151,7
@@
class EnsemblXref extends EnsemblRestClient
throws IOException
{
JSONParser jp = new JSONParser();
throws IOException
{
JSONParser jp = new JSONParser();
- List<DBRefEntry> result = new ArrayList<DBRefEntry>();
+ List<DBRefEntry> result = new ArrayList<>();
try
{
JSONArray responses = (JSONArray) jp.parse(br);
try
{
JSONArray responses = (JSONArray) jp.parse(br);