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JAL-2805 added getter in trees for retrieving all node sequences
[jalview.git]
/
src
/
jalview
/
ext
/
forester
/
DataConversions.java
diff --git
a/src/jalview/ext/forester/DataConversions.java
b/src/jalview/ext/forester/DataConversions.java
index
be97e0e
..
ceeecde
100644
(file)
--- a/
src/jalview/ext/forester/DataConversions.java
+++ b/
src/jalview/ext/forester/DataConversions.java
@@
-17,14
+17,14
@@
public final class DataConversions
{
foresterSeq.setName(jalviewSequence.getDescription());
}
{
foresterSeq.setName(jalviewSequence.getDescription());
}
- foresterSeq.setMolecularSequenceAligned(sequenceIsAligned); // all tree
- // sequences
- // should
- // be aligned
- // already
+
+ // all tree sequences should be aligned already
+ foresterSeq.setMolecularSequenceAligned(sequenceIsAligned);
+
foresterSeq.setMolecularSequence(jalviewSequence.getSequenceAsString());
foresterSeq.setMolecularSequence(jalviewSequence.getSequenceAsString());
- if (jalviewSequence.isProtein()) // add checks for DNA or RNA (infer from
- // forester itself?)
+
+ // add checks for DNA or RNA (infer from forester itself?)
+ if (jalviewSequence.isProtein())
{
try
{
{
try
{
@@
-73,4
+73,6
@@
public final class DataConversions
return foresterMatrix;
}
return foresterMatrix;
}
+
+
}
}