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Merge branch 'develop' into patch/JAL-4110_stdout_for_tests
[jalview.git]
/
src
/
jalview
/
ext
/
htsjdk
/
HtsContigDb.java
diff --git
a/src/jalview/ext/htsjdk/HtsContigDb.java
b/src/jalview/ext/htsjdk/HtsContigDb.java
index
9a985b6
..
8cce87a
100644
(file)
--- a/
src/jalview/ext/htsjdk/HtsContigDb.java
+++ b/
src/jalview/ext/htsjdk/HtsContigDb.java
@@
-261,7
+261,7
@@
public class HtsContigDb
{
if (!isValid() || !refFile.isIndexed())
{
{
if (!isValid() || !refFile.isIndexed())
{
- System.err.println(
+ jalview.bin.Console.errPrintln(
"Cannot read contig as file is invalid or not indexed");
return null;
}
"Cannot read contig as file is invalid or not indexed");
return null;
}