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JAL-2805 added nexus specific parser settings
[jalview.git]
/
src
/
jalview
/
ext
/
paradise
/
Annotate3D.java
diff --git
a/src/jalview/ext/paradise/Annotate3D.java
b/src/jalview/ext/paradise/Annotate3D.java
index
5b75206
..
d50ad87
100644
(file)
--- a/
src/jalview/ext/paradise/Annotate3D.java
+++ b/
src/jalview/ext/paradise/Annotate3D.java
@@
-94,8
+94,8
@@
public class Annotate3D
}
@Override
}
@Override
- public boolean startObjectEntry(String key) throws ParseException,
- IOException
+ public boolean startObjectEntry(String key)
+ throws ParseException, IOException
{
// TODO Auto-generated method stub
return false;
{
// TODO Auto-generated method stub
return false;
@@
-123,8
+123,8
@@
public class Annotate3D
}
@Override
}
@Override
- public boolean primitive(Object value) throws ParseException,
- IOException
+ public boolean primitive(Object value)
+ throws ParseException, IOException
{
// TODO Auto-generated method stub
return false;
{
// TODO Auto-generated method stub
return false;
@@
-144,8
+144,8
@@
public class Annotate3D
// return processJsonResponseFor(HttpClientUtils.doHttpUrlPost(twoDtoolsURL,
// vals));
ArrayList<Reader> readers = new ArrayList<Reader>();
// return processJsonResponseFor(HttpClientUtils.doHttpUrlPost(twoDtoolsURL,
// vals));
ArrayList<Reader> readers = new ArrayList<Reader>();
- final BufferedReader postResponse = HttpClientUtils.doHttpUrlPost(
- twoDtoolsURL, vals, 0, 0);
+ final BufferedReader postResponse = HttpClientUtils
+ .doHttpUrlPost(twoDtoolsURL, vals, 0, 0);
readers.add(postResponse);
return readers.iterator();
readers.add(postResponse);
return readers.iterator();
@@
-183,15
+183,15
@@
public class Annotate3D
;
if (sval == null)
{
;
if (sval == null)
{
- System.err
- .println("DEVELOPER WARNING: Annotate3d didn't return a '2D' tag in its response. Consider checking output of server. Response was :"
+ System.err.println(
+ "DEVELOPER WARNING: Annotate3d didn't return a '2D' tag in its response. Consider checking output of server. Response was :"
+ val.toString());
sval = "";
}
+ val.toString());
sval = "";
}
- return new StringReader(
- (sval instanceof JSONObject) ? ((JSONObject) sval)
- .toString() : sval.toString());
+ return new StringReader((sval instanceof JSONObject)
+ ? ((JSONObject) sval).toString()
+ : sval.toString());
}
}
@@
-228,9
+228,8
@@
public class Annotate3D
};
} catch (Exception foo)
{
};
} catch (Exception foo)
{
- throw new Exception(
- MessageManager
- .getString("exception.couldnt_parse_responde_from_annotated3d_server"),
+ throw new Exception(MessageManager.getString(
+ "exception.couldnt_parse_responde_from_annotated3d_server"),
foo);
}
foo);
}