- * Computes and returns a set of commands to colour residues in Chimera the same
- * as mapped residues in the alignment
- *
- * @param files
- * @param viewPanel
- * @return
- */
- @Override
- protected String[] getColourBySequenceCommands(
- String[] files, AlignmentViewPanel viewPanel)
- {
- Map<Object, AtomSpecModel> colourMap = StructureCommands.buildColoursMap(this, viewPanel);
-
- return ChimeraCommands.getColourBySequenceCommand(colourMap, this);
- }
-
- /**