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java 1.1 compatibility (again)
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
289ffbc
..
1c488fe
100755
(executable)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-2866,7
+2866,7
@@
public class AlignFrame
{
SequenceI [] oldOrder = viewport.getAlignment().getSequencesArray();
AlignmentSorter.sortByPID(viewport.getAlignment(),
{
SequenceI [] oldOrder = viewport.getAlignment().getSequencesArray();
AlignmentSorter.sortByPID(viewport.getAlignment(),
- viewport.getAlignment().getSequenceAt(0));
+ viewport.getAlignment().getSequenceAt(0), null);
addHistoryItem(new OrderCommand("Pairwise Sort", oldOrder,
viewport.alignment));
alignPanel.paintAlignment(true);
addHistoryItem(new OrderCommand("Pairwise Sort", oldOrder,
viewport.alignment));
alignPanel.paintAlignment(true);
@@
-3129,7
+3129,7
@@
public class AlignFrame
public void actionPerformed(ActionEvent e)
{
SequenceI [] oldOrder = viewport.getAlignment().getSequencesArray();
public void actionPerformed(ActionEvent e)
{
SequenceI [] oldOrder = viewport.getAlignment().getSequencesArray();
- AlignmentSorter.sortByAnnotationScore(scoreLabel, viewport.getAlignment());
+ AlignmentSorter.sortByAnnotationScore(scoreLabel, viewport.getAlignment());//,viewport.getSelectionGroup());
addHistoryItem(new OrderCommand("Sort by "+scoreLabel, oldOrder, viewport.alignment));
alignPanel.paintAlignment(true);
}
addHistoryItem(new OrderCommand("Sort by "+scoreLabel, oldOrder, viewport.alignment));
alignPanel.paintAlignment(true);
}