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Allow old style groups file
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
f2d0b69
..
7b394a3
100755
(executable)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-217,11
+217,18
@@
public class AlignFrame
\r
type = st.nextToken();
\r
\r
\r
type = st.nextToken();
\r
\r
+ if (fr.getColour(type) == null)
\r
+ {
\r
+ // Probably the old style groups file
\r
+ UserColourScheme ucs = new UserColourScheme(type);
\r
+ fr.setColour(type, ucs.findColour("A"));
\r
+ }
\r
+
\r
+
\r
sf = new SequenceFeature(type, desc, "", start, end);
\r
\r
seq.addSequenceFeature(sf);
\r
\r
sf = new SequenceFeature(type, desc, "", start, end);
\r
\r
seq.addSequenceFeature(sf);
\r
\r
- System.out.println(sf.getType()+" "+sf.getBegin());
\r
\r
// sg = new SequenceGroup(text, ucs, true, true, false, start, end);
\r
// sg.addSequence(seq, false);
\r
\r
// sg = new SequenceGroup(text, ucs, true, true, false, start, end);
\r
// sg.addSequence(seq, false);
\r