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system.exit or destroy if applet or app
[jalview.git]
/
src
/
jalview
/
gui
/
AlignViewport.java
diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
b21f47e
..
1c6c453
100755
(executable)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-20,9
+20,7
@@
public class AlignViewport
boolean showColourText=false;
\r
boolean showBoxes=true;
\r
boolean wrapAlignment=false;
\r
boolean showColourText=false;
\r
boolean showBoxes=true;
\r
boolean wrapAlignment=false;
\r
- boolean renderGaps = false;
\r
- boolean groupEdit = false;
\r
- boolean groupDefiningMode = true;
\r
+ boolean renderGaps = true;
\r
\r
ColourSchemeI globalColourScheme = null;
\r
boolean conservationColourSelected = false;
\r
\r
ColourSchemeI globalColourScheme = null;
\r
boolean conservationColourSelected = false;
\r
@@
-39,7
+37,7
@@
public class AlignViewport
Font font = new Font("SansSerif",Font.PLAIN,10);
\r
AlignmentI alignment;
\r
\r
Font font = new Font("SansSerif",Font.PLAIN,10);
\r
AlignmentI alignment;
\r
\r
- Selection sel = new Selection();
\r
+ Selection sel = new Selection(this);
\r
ColumnSelection colSel = new ColumnSelection();
\r
\r
OutputGenerator og;
\r
ColumnSelection colSel = new ColumnSelection();
\r
\r
OutputGenerator og;
\r
@@
-276,15
+274,7
@@
public class AlignViewport
public boolean getShowBoxes() {
\r
return showBoxes;
\r
}
\r
public boolean getShowBoxes() {
\r
return showBoxes;
\r
}
\r
- // public CommandParser getCommandLog() {
\r
- /// return log;
\r
- // }
\r
- public boolean getGroupEdit() {
\r
- return groupEdit;
\r
- }
\r
- public void setGroupEdit(boolean state) {
\r
- groupEdit = state;
\r
- }
\r
+
\r
public char getGapCharacter() {
\r
return getAlignment().getGapCharacter();
\r
}
\r
public char getGapCharacter() {
\r
return getAlignment().getGapCharacter();
\r
}
\r