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JAL-1114 - refactor methods handling Vectors and Hashtables to Lists and Maps, and...
[jalview.git]
/
src
/
jalview
/
gui
/
AlignViewport.java
diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
8f615aa
..
8bb40a1
100644
(file)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-1161,20
+1161,17
@@
public class AlignViewport extends AlignmentViewport implements SelectionSource,
public void updateSequenceIdColours()
{
public void updateSequenceIdColours()
{
- Vector groups = alignment.getGroups();
if (sequenceColours == null)
{
sequenceColours = new Hashtable();
}
if (sequenceColours == null)
{
sequenceColours = new Hashtable();
}
- for (int ig = 0, igSize = groups.size(); ig < igSize; ig++)
+ for (SequenceGroup sg:alignment.getGroups())
{
{
- SequenceGroup sg = (SequenceGroup) groups.elementAt(ig);
if (sg.idColour != null)
{
if (sg.idColour != null)
{
- Vector sqs = sg.getSequences(getHiddenRepSequences());
- for (int s = 0, sSize = sqs.size(); s < sSize; s++)
+ for (SequenceI s:sg.getSequences(getHiddenRepSequences()))
{
{
- sequenceColours.put(sqs.elementAt(s), sg.idColour);
+ sequenceColours.put(s, sg.idColour);
}
}
}
}
}
}