- AnnotationColourGradient newCS = new AnnotationColourGradient(alignmentAnnotation, global, alignmentAnnotation.threshold!=null ? AnnotationColourGradient.ABOVE_THRESHOLD:AnnotationColourGradient.NO_THRESHOLD);
- if (alignmentAnnotation.sequenceRef!=null)
+ AnnotationColourGradient newCS = new AnnotationColourGradient(
+ alignmentAnnotation, global,
+ alignmentAnnotation.threshold != null
+ ? AnnotationColourGradient.ABOVE_THRESHOLD
+ : AnnotationColourGradient.NO_THRESHOLD);
+ if (alignmentAnnotation.sequenceRef != null)